Best PubMed MCP Servers
PubMed is a free search engine accessing primarily the MEDLINE database of references and abstracts on life sciences and biomedical topics maintained by the United States National Library of Medicine.
Why this server?
Provides tools to search academic papers from PubMed, enabling retrieval of biomedical literature.
AlicenseBqualityAmaintenancePay-per-call AI agent APIs on Base via x402. Multiple tools across patents, law, AI, geo, weather, crypto, and more. Always growing.2018MITWhy this server?
Provides biomedical literature discovery from a PubMed-derived corpus, including natural language, PMID, DOI, and PMCID search, publication detail retrieval, and traversal of citation and semantic neighborhoods.
AlicenseAqualityAmaintenanceEnables agents to search a public PubMed-derived corpus by natural language or identifiers and to retrieve publication details while traversing bounded citation and semantic literature graphs.7Apache 2.0Why this server?
Provides access to PubMed molecular hydrogen medical literature with inline safety notes.

@h2-papers/mcp-serverofficial
AlicenseAqualityDmaintenanceEnables searching and retrieving molecular hydrogen medical literature from H2 Papers database, with per-paper safety notes always included in results.637 npmMITWhy this server?
Offers SQL querying of PubMed biomedical literature and citations.

microquery-mcpofficial